Journal Papers

-2025-
80. A Novel Single-Layer Microfluidic Device for Dynamic Stimulation, Culture, and Imaging of Mammalian Cells
A Mustafa, A La Regina, E Pedone, A Erten, L Marucci
Biosensors, 2025

79. Flexible Microfluidics-Integrated Electrochemical System for Detection of Tumor Necrosis Factor-Alpha Under Continuous Flow of Sweat
M Ploner, B Shkodra, L Franchin, A Altana, M Petrelli, MAC Angeli, O Ferhanoğlu
Biosensors and Bioelectronics, 2025

78. A tactile sensing capsule endoscope employing force sensing cantilevers for tumor diagnosis in the GI tract
F Peker, ÖG Akcan, D Atak, IH Ozata, DS Uymaz, E Balik, M Zeybel, O Ferhanoğlu
Sensors and Actuators A: Physical, 2025

77. A MEMS on Fiber Multisensor Platform for Surgical Assistance
M Teymoori, P Zolfaghari, O Ferhanoğlu, M Tümer, AD Yalcinkaya
IEEE Sensors Journal, 2025

76. Investigation of eye-tracking performance under varying wavelengths, illumination conditions, and eye colors
M Teksin, O Ferhanoğlu
Electro-Optical and Infrared Systems: Technology and Applications XXII, 2025

75. Laser-induced breakdown spectroscopy for lithium-mediated cancer cell detection and ablation
O Gürcüoğlu, T Mutlu, O Ferhanoğlu, MK Ruhi
Lasers in Medical Science, 2025

74. A Hybrid Deep Learning and Optical Flow Framework for Monocular Capsule Endoscopy Localization
İ Yakar, RA Kuçak, S Bilgi, O Ferhanoğlu, TC Akinci
Electronics, 2025

73. A Tactile-Based Capsule Endoscope for Detecting Tissue Stiffness
ÖG Akcan, F Peker, D Atak, M Zeybel, H Torun, O Ferhanoğlu
2025 17th Biomedical Engineering International Conference (BMEiCON), 2025

72. Computational and Experimental Modeling of Vocal Fold Pathology in a Realistic Phonation System
K Erdil, O Tavlı, H Yaran, O Ferhanoğlu
2025 17th Biomedical Engineering International Conference (BMEiCON), 2025

71. A novel silicon photonic integrated circuit for MRI data transmission
SH Youvalari, O Ferhanoğlu, AD Yalçınkaya
2025 International Conference on Optical MEMS and Nanophotonics (OMN), 2025

70. Implementation of a Scalable Multi-Channel WDM Optical Link for MRI Signal Transmission Using Ring Resonators and MZI Switches
H Asadi, AD Yalçınkaya, O Ferhanoğlu
2025 International Conference on Optical MEMS and Nanophotonics (OMN), 2025

69. A Microfluidic Refreshable Braille Display System
ÖG Akcan, Ö Koçoğlu, AC Erten, O Ferhanoğlu
2025 21st International Conference on Synthesis, Modeling, Analysis and Simulation Methods and Applications to Circuit Design (SMACD), 2025

68. Anisotropic and Tunable Vocal Fold Phantom for Biomechanical Modeling
A Sarrafzadeh, K Erdil, O Tavlı, O Ferhanoğlu, AC Erten
2025 21st International Conference on Synthesis, Modeling, Analysis and Simulation Methods and Applications to Circuit Design (SMACD), 2025

67. Investigating hepatic fibrosis heterogeneity by three-dimensional imaging in metabolic dysfunction-associated steatotic liver disease
B Yigit, E Ozgonul, O Yaman, T Sipahioglu, B Ulukan, Y Cetin Tas, O Ferhanoğlu
Scientific Reports, 2025

66. Integrated Femtosecond Laser System for Precision Surface Patterning and High-Speed Cutting of Intraocular Lenses
G Alpakut, B Karat, S Ozkan, I Atespare, E Yaroglu, O Uysal, MB Unlu, O Ferhanoğlu
2025 Conference on Lasers and Electro-Optics Europe & European Quantum Electronics Conference (CLEO/Europe-EQEC), 2025

65. Design and Development of a Flexible Optical Force Sensor for Robotic Applications
MH Alzaim, SA Zaid, GB Eid, CF Yaşar, M Doğan, O Ferhanoğlu
2025 3rd International Conference on Business Analytics for Technology and Security, 2025

64. Stable Micro-Nano Bubble Generation by Low-Power Laser Excitation in a Biocompatible Medium for Drug Delivery
U Bunyatova, M Doğan, O Ferhanoğlu, E Tekin, M Kilinc
Clinical and Translational Biophotonics, 2025

63. Magnetic resonance (mr) compatible over-fiber multi-sensor system
O Ferhanoğlu, P Zolfaghari, AD Yalçınkaya, OK Erden, ...
US Patent App. 18/725,883, 2025

62. Magnetic actuator driver system for laser scanning capsule endoscopy
B Kebapcıoğlu, K Erdil, AC Erten, O Ferhanoğlu, MB Yelten
AEU-International Journal of Electronics and Communications, 2025


-2024-
61. Optical knife-edge detection for micropillar-based microfluidic viscometer
E Şentürk, C Köksal, AC Erten, O Ferhanoğlu
Sensors and Actuators A: Physical, 2024

60. Active distance control in multi-capsule endoscopy via closed-loop electromagnetic force between capsules
F Peker, O Ferhanoğlu
Medical & Biological Engineering & Computing, 2024

59. Ultra-stable nano-micro bubbles in a biocompatible medium for safe delivery of anti-cancer drugs
U Bunyatova, M Dogan, E Tekin, O Ferhanoğlu
Scientific Reports, 2024

58. Towards capsule endoscope locomotion in large volumes: design, fuzzy modeling, and testing
F Peker, MA Beşer, E Işıldar, Y Terzioğlu, AC Erten, T Kumbasar, O Ferhanoğlu
Robotica, 2024

57. Cascaded laser scanning towards high-resolution LiDAR
P Zolfaghari, M Khodapanahandeh, H Urey, O Ferhanoglu
Optics & Laser Technology, 2024


-2023-
56. Smart glasses to monitor intraocular pressure using optical triangulation
P Zolfaghari, AD Yalcinkaya, O Ferhanoglu
Optics Communications, 2023

55. Electromagnetically actuated 3D-printed tunable optical slit device
K Erdil, O Gürcüoğlu, O Ferhanoğlu
Applied Optics, 2023

54. A Resonant Pulley Rotary Actuator for Scanning Capsule Endoscopy
E Tekin, AC Erten, MB Yelten, O Ferhanoğlu
IEEE Photonics Technology Letters, 2023

53. In-situ Young’s Modulus Characterization of Elastomeric Microfluidic Chips with Micropillars
C Köksal, E Şentürk, O Ferhanoğlu, AC Erten
IEEE Photonics Technology Letters, 2023

52. Machine learning based microfluidic sensing device for viscosity measurements
A Mustafa, D Haider, A Barua, M Tanyeri, A Erten, O Yalcin
Sensors & Diagnostics, 2023

51. In-situ measurement of anisotropic Young's modulus in fused deposition modeling printed cantilevers
E Tekin, M Çağmel, CO Aydın, O Ferhanoglu, MF Toy
Journal of Micromechanics and Microengineering, 2023

50. MEMS Sensor–Glasses Pair for Real-Time Monitoring of Intraocular Pressure
P Zolfaghari, AD Yalcinkaya, O Ferhanoglu
IEEE Photonics Technology Letters, 2023

49. A stacked multi-sensor platform for real-time MRI guided interventions
P Zolfaghari, OK Erden, M Tumer, AD Yalcinkaya, O Ferhanoglu
Optics and Lasers in Engineering, 2023

48. Wideband and dual‐polarized Twin Hilbert curve antennas for capsule endoscopy
E Güreş, S Kılınç, I Shayea, O Ferhanoğlu
Microwave and Optical Technology Letters, 2023

46. An ISM-band direct down-conversion double-balanced mixer for biomedical applications
E Yeşil, O Ferhanoğlu, MB Yelten
Analog Integrated Circuits and Signal Processing, 2022

45. An Easy-to-Fabricate Microfluidic Shallow Trench Induced Three-Dimensional Cell Culturing and Imaging (STICI3D) Platform
UC Coskun, F Kus, AU Rehman, B Morova, M Gulle, H Baser, D Kul, A Kiraz, K Baysal, A Erten
ACS omega, 2022

44. Development of a single layer microfluidic device for dynamic stimulation, culture and imaging of mammalian cells
A Mustafa, E Pedone, A La Regina, A Erten, L Marucci
Microwave and Optical Technology Letters, 2022

43. 3D-printed actuator-based beam-steering approach for improved physical layer security in visible light communication
MC Erdem, O Gürcüoğlu, E Panayirci, GK Kurt, O Ferhanoğlu
Applied Optics, 2022

42. Cost-effective test-bed for secure visible-light communication
O Gürcüoğlu, MC Erdem, O Ferhanoğlu, E Panayirci, GK Kurt
Optical Engineering, 2022

41. Challenges in Developing a Bessel-Beam Based Ultrafast Ablation Probe
E Opar, G Alpakut, U Parlatan, S Yavaş, B Yüksel, MB Ünlü, HF Buyru, E Baştu, O Ferhanoğlu
Instruments and Experimental Techniques, 2022

40. Three-dimensional imaging of cleared human liver tissues reveals extensive fibrosis heterogeneity in non-alcoholic fatty liver disease
B Yiğit, E Özgönül, Ö Yaman, B Ulukan, YÇ Taş, B Morova, M Aydın, Y Uysallı, E Demirtaş, M Erkan, YG Özdemir, S Karahüseyinoğlu, C Yurdaydın, M Akyıldız, A Sheth, H Kırımoğlu, M Dayangac, O Ferhanoğlu, A Kiraz, M Zeybel
Journal of Hematology, 2022


-2021-
39. Monitoring modal shape of miniaturized dynamic structures via laser triangulation and stroboscopy
YE Erdem, MB Yelten, O Ferhanoğlu
Microsystem Technologies, 2021

38. A meandered dual loop antenna for wireless capsule endoscopy
E Güreş, MB Yelten, Ö Özdemir, O Ferhanoğlu
AEU-International Journal of Electronics and Communications, 2021

37. MRI Compatible Fiber Optic Multi Sensor Platform for Real Time Vital Monitoring
P Zolfaghari, OK Erden, O Ferhanoglu, M Tümer, AD Yalcinkaya
Journal of Lightwave Technology, 2021

36. Optical characterization of olive and sun flower oils via mueller matrix polarimetry in combination with principal component analysis
D Derman, EC Şenel, E Opar, O Ferhanoğlu, Ö Polat
Journal of Food Measurement and Characterization, 2021

35. A 3D-printed tunable fluidic lens with collagen-enriched membrane
EC Şenel, ID Derman, S Şatak, AC Erten, O Ferhanoğlu
Microsystem Technologies, 2021

34. Multi-Capsule Endoscopy: An initial study on modeling and phantom experimentation of a magnetic capsule train
F Peker, O Ferhanoğlu
Journal of Medical and Biological Engineering, 2021

33. Improved physical layer security of visible light communications with focused light emitters
HO Çirkinoğlu, O Ferhanoğlu, GK Kurt
Optics Communications, 2021

32. Optical characterization of heat dependent collagen denaturation via Mueller matrix polarimetry in combination with principal component analysis
D Derman, E Opar, O Ferhanoğlu, Ö Polat, M Kazanci
Applied Optics, 2021

31. Effect of Heat Level and Expose Time on Denaturation of Collagen Tissues
İD Derman, EC Şenel, O Ferhanoğlu, İ Çilesiz, M Kazanci
Cellular and Molecular Bioengineering, 2021

30. Monitoring modal shape of miniaturized dynamic structures via laser triangulation and stroboscopy
YE Erdem, MB Yelten, O Ferhanoğlu
Microsystem Technologies, 2021

29. A 3D-printed 3D actuator for miniaturized laser scanning probes
O Gürcüoğlu, ID Derman, M Altınsoy, R Khayatzadeh, F Çivitci, AC Erten, O Ferhanoğlu
Sensors and Actuators A: Physical, 2021



-2024-
28. A micropillar-based microfluidic viscometer for Newtonian and non-Newtonian fluids
A Mustafa, A Eser, AC Aksu, A Kiraz, M Tanyeri, A Erten, O Yalcin
Analytica Chimica Acta, 2020

27. Synchronous Imaging of Multiple Slices Using Higher-Order Bessel Beams and a Spherical Lens
M Tekpınar, O Ferhanoğlu
IEEE Photonics Technology Letters, 2020

26. Experimental and modeling studies of automotive-qualified OLEDs under electrical stress
A Güney, MB Yelten, O Ferhanoğlu, N Kahraman
Microelectronics Reliability, 2020

25. Mixture model and its experimental validation for visible light communications
S Büyükçorak, OA Topal, O Ferhanoğlu, GK Kurt
Electronics Letters, 2020

23. Scattering Metal Waveguide Based Speckle-Enhanced Prism Spectrometry
SK Çetindağ, MF Toy, O Ferhanoğlu, F Civitci
Journal of Lightwave Technology, 2020

22. A 45° tilted 3D-printed scanner for compact side-view laser scanning endoscopy
J. Savaş, M. Altınsoy, Y.D. Gökdel, O. Ferhanoğlu, F. Çivitci
Microsystem Technologies, 2020

21. Enhanced transmitting and blocking filter design approach for laser scanning applications based on combining GSM and AFGSM methods
O Erkan, S Şimşek, O Ferhanoğlu
AEU-International Journal of Electronics and Communications, 2020

20. Reliability Testing of 3D-Printed Polyamide Actuators
G Kasap, YD Gökdel, MB Yelten, O Ferhanoğlu
IEEE Transactions on Device and Materials Reliability, 2020

19. Size-based sorting of emulsion droplets in microfluidic channels patterned with laser-ablated guiding tracks
AU Rehman, UC Coşkun, Z Rashid, B Morova, A Jonas, A Erten, A Kiraz
Analytical Chemistry, 2020



-2019-
18. A stainless-steel micro-scanner for rapid 3D confocal imaging 
H. A. Oyman, Y.D. Gökdel, O. Ferhanoğlu, A.D. Yalçınkaya
Journal of Physics D: Applied Physics, 2019

17. Multi-pattern generating piezoelectric fiber scanner towards endoscopic applications
M. Tekpınar, R. Khayatzadeh, O. Ferhanoğlu
Optical Engineering, 2019

16. Technology Advancements in Blood Coagulation Measurements for Point-of-Care Diagnostic Testing 
M Mohammadi Aria, A Erten, O Yalcin
Front. Bioeng. Biotechnol., 2019

15. Passive sorting of emulsion droplets with different interfacial properties using laser-patterned surfaces
Z Rashid, A Erten, B Morova, M Muradoglu, A Jonáš, A Kiraz
Microfluidics and Nanofluidics, 2019



-2018-
14. A Speckle-Enhanced Prism Spectrometer with High Dynamic-Range
K. Çetindağ, M.F. Toy, O. Ferhanoğlu, F. Çivitci
IEEE Photonics Technology Letters, 2018

13. Scanning fiber microdisplay: design, implementation, and comparison to MEMS mirror-based scanning displays
R. Khayatzadeh, F. Çivitci, O. Ferhanoğlu, H. Ürey
Optics Express, 2018

12. Reliability Testing of 3D-Printed Electromechanical Scanning Devices
B.M. Gönültaş, J. Savaş, R. Khayatzedeh, S. Aygün, F. Çivitci, Y.D. Gökdel, M.B. Yelten, O. Ferhanoğlu
Journal of Electronic Testing, 2018

11. Performance of a three-dimensional-printed microscanner in a laser scanning microscopy application
H.A. Oyman, Y.D. Gökdel, O. Ferhanoğlu, A.D. Yalçınkaya
Optical Engineering, 2018

10. Towards fully 3D-printed miniaturized confocal imager
J. Savaş, R. Khayatzadeh, F. Çivitci, Y.D. Gökdel, O. Ferhanoglu
Optical Engineering, 2018



-2017-
9. A 3D Scanning Laser Endoscope Utilizing a Circular Piezoelectric Membrane
R. Khayatzadeh, F. Çivitci, O. Ferhanoglu
Optics Communications, 2017

8. Unwarped Lissajous Scanning with Polarization Maintaining Fibers
R. Khayatzadeh, O. Ferhanoglu, F. Çivitci
IEEE Photonic Technology Letters, 2017

7. Optimization of piezo-fiber scanning archtitecture for low voltage/high displacement operation
R. Khayatzadeh, F. Çivitci, O. Ferhanoglu
Sensors and Actuators A: Physical, 2017

6. Thermomechanical MEMS membranes for fiber optic temperature sensing
O. Ferhanoglu
Turkish Journal of Electrical Engineering and Computer Sciences, 2017



-2016-
5. Kagome fiber based ultrafast laser microsurgery probe delivering micro-Joule pulse energies
K. Subramanian, I. Gabay, O. Ferhanoglu, A.Shadfan, M. Pawlowski, Y. Wang, T. Tkaczyk, A. Ben-Yakar
Biomedical Optics Express, 2016

4. Enhanced Dissolution of Liquid Microdroplets in the Extensional Creeping Flow of a Hydrodynamic Trap
A. Mustafa, A. Erten, R. Ayaz, O. Kayllolu, A. Eser, M. Eryrek, M. Irfan, M. Muradoglu, M. Tanyeri, A. Kiraz
Langmuir, 2016

3. Observation of Whispering Gallery Modes in Elastic Light Scattering from Microdroplets Optically Trapped in a Microfluidic Channel
S. Anand, M. Eryurek, Y. Karadag, A. Erten, A. Serpenguzel, A. Jonas, A. Kiraz
Journal of Optical Society of America B, 2016

2. A Prism-based Optical Readout Method for MEMS Bimaterial Infrared Sensors
U. Adıyan, F. Çivitci, O. Ferhanoglu, H. Torun, H. Urey
IEEE Photonics Technology Letters, 2016

1. Fiber temperature sensor utilizing a thermomechanical MEMS detector
H. O. Çirkinoğlu, H. Bilgin, F. Çivitci, H. Torun, O. Ferhanoglu
Journal of Lightwave Technology, 2016